Student Publications
2024
Mohammed Hoque
The Cby3/ciBAR1 complex positions the annulus along the sperm flagellum during spermiogenesis https://pubmed.ncbi.nlm.nih.gov/38197861/
Eric Paulissen
A Chemically Inducible Muscle Ablation System for the Zebrafish https://pubmed.ncbi.nlm.nih.gov/38436568/
Live Imaging Transverse Sections of Zebrafish Embryo Explants https://pubmed.ncbi.nlm.nih.gov/38379824/
2023
Seamus Balinth
ΔNp63α in cancer: importance and therapeutic opportunities https://pubmed.ncbi.nlm.nih.gov/36115734/
Ga-Ram Hwang
Analysis of MicroRNAs in Ferroptosis https://pubmed.ncbi.nlm.nih.gov/37578710/
Yixin Hu
Origins of DNA replication in eukaryotes https://pubmed.ncbi.nlm.nih.gov/36640769/
Jessica Imperato
Retinoic acid signaling during priming licenses intestinal CD103+ CD8 TRM cell differentiation https://pubmed.ncbi.nlm.nih.gov/36809399/
Yagmur Kan
Domain Architecture of the Nonreceptor Tyrosine Kinase Ack1 https://pubmed.ncbi.nlm.nih.gov/36980241/
Biochemical Studies of Systemic Lupus Erythematosus-Associated Mutations in Nonreceptor Tyrosine Kinases Ack1 and Brk https://pubmed.ncbi.nlm.nih.gov/36854171/
Deborah Kim
Human uridine 5'-monophosphate synthase stores metabolic potential in inactive biomolecular condensates https://pubmed.ncbi.nlm.nih.gov/36708921/
Victoria Mingione
Allosteric regulation and inhibition of protein kinases https://pubmed.ncbi.nlm.nih.gov/36794774/
Structural mechanism of a drug-binding process involving a large conformational change of the protein target https://pubmed.ncbi.nlm.nih.gov/37019905/
Megan Mladinich
Establishment of a CPER reverse genetics system for Powassan virus defines attenuating NS1 glycosylation sites and an infectious NS1-GFP11 reporter virus https://pubmed.ncbi.nlm.nih.gov/37489888/
ZIKV induction of tristetraprolin in endothelial and Sertoli cells post-transcriptionally inhibits IFNβ/λ expression and promotes ZIKV persistence https://pubmed.ncbi.nlm.nih.gov/37707056/
Greisly Nunez
Recruitment of the lipid kinase Mss4 to the meiotic spindle pole promotes prospore membrane formation in Saccharomyces cerevisiae https://pubmed.ncbi.nlm.nih.gov/36857169/
Zhe Qian
Manipulating PTPRD function with ectodomain antibodies https://pubmed.ncbi.nlm.nih.gov/37669874/
Padmina Shresha
Chd5 Regulates the Transcription Factor Six3 to Promote Neuronal Differentiation https://pubmed.ncbi.nlm.nih.gov/36636025/
Jialin Sun
Mutations in the transcriptional regulator MeCP2 severely impact key cellular and molecular signatures of human astrocytes during maturation https://pubmed.ncbi.nlm.nih.gov/36640327/
Yutong Xiao
An expandable FLP-ON::TIR1 system for precise spatiotemporal protein degradation in Caenorhabditis elegans https://pubmed.ncbi.nlm.nih.gov/36722258/
2022
Seamus Balinth
EZH2 regulates a SETDB1/ΔNp63α axis via RUNX3 to drive a cancer stem cell phenotype in squamous cell carcinoma https://pubmed.ncbi.nlm.nih.gov/35864175/
Mohammed Hoque
Essential Roles of Efferent Duct Multicilia in Male Fertility https://pubmed.ncbi.nlm.nih.gov/35159149/
Ga-Ram Hwang
Roles of microRNAs in Gastrointestinal Cancer Stem Cell Resistance and Therapeutic Development https://pubmed.ncbi.nlm.nih.gov/33562727/
Jessica Imperato
A blend of broadly-reactive and pathogen-selected Vγ4 Vδ1 T cell receptors confer broad bacterial reactivity of resident memory γδ T cells https://pubmed.ncbi.nlm.nih.gov/34462572/
The accumulation of Vγ4 T cells with aging is associated with an increased adaptive Vγ4 T cell response after foodborne Listeria monocytogenes infection of mice https://pubmed.ncbi.nlm.nih.gov/35501808/
Yagmur Kan
Activity of the nonreceptor tyrosine kinase Ack1 is regulated by tyrosine phosphorylation of its Mig6 homology region https://pubmed.ncbi.nlm.nih.gov/36178070/
Muyan Li
A Novel Role of SMG1 in Cholesterol Homeostasis That Depends Partially on p53 Alternative Splicing https://www.mdpi.com/2072-6694/14/13/3255
Victoria Mingione
Kinases on Double Duty: A Review of UniProtKB Annotated Bifunctionality within the Kinome https://pubmed.ncbi.nlm.nih.gov/35625613/
Validation of an Allosteric Binding Site of Src Kinase Identified by Unbiased Ligand Binding Simulations https://pubmed.ncbi.nlm.nih.gov/35595169/
Megan Mladinich
Measuring Transendothelial Electrical Resistance (TEER) for Dengue Infection Studies https://pubmed.ncbi.nlm.nih.gov/34709643/
Powassan Viruses Spread Cell to Cell during Direct Isolation from Ixodes Ticks and Persistently Infect Human Brain Endothelial Cells and Pericytes https://pubmed.ncbi.nlm.nih.gov/34643436/
Chun-Hao Pan
Dissecting the Oncogenic Roles of Keratin 17 in the Hallmarks of Cancer https://pubmed.ncbi.nlm.nih.gov/34921015/
Eric Paulissen
Somite morphogenesis is required for axial blood vessel formation during zebrafish embryogenesis https://pubmed.ncbi.nlm.nih.gov/35137687/
Aziz Rangwala
Discovery and molecular basis of subtype-selective cyclophilin inhibitors https://pubmed.ncbi.nlm.nih.gov/36163383/
Kinases on Double Duty: A Review of UniProtKB Annotated Bifunctionality within the Kinome https://pubmed.ncbi.nlm.nih.gov/35625613/
Validation of an Allosteric Binding Site of Src Kinase Identified by Unbiased Ligand Binding Simulations https://pubmed.ncbi.nlm.nih.gov/35595169/
Resistance to kinase inhibition through shortened target engagement https://pubmed.ncbi.nlm.nih.gov/35252553/
Sydney Snaider
Rb-E2F-HDAC Repressor Complexes Control Interferon-Induced Repression of Adenovirus To Promote Persistent Infection https://pubmed.ncbi.nlm.nih.gov/35546119/
2021
Seamus Balinth
BRD4 Regulates Transcription Factor ΔNp63α to Drive a Cancer Stem Cell Phenotype in Squamous Cell Carcinomas https://pubmed.ncbi.nlm.nih.gov/34697072/
Julie Bettke
Mutant p53 suppresses innate immune signaling to promote tumorigenesis https://pubmed.ncbi.nlm.nih.gov/33545063/
Inflammatory Monocytes Promote Granuloma-Mediated Control of Persistent Salmonella Infection https://pubmed.ncbi.nlm.nih.gov/35311578/
IKKα-Mediated Noncanonical NF-κB Signaling Is Required To Support Murine Gammaherpesvirus 68 Latency In Vivo https://pubmed.ncbi.nlm.nih.gov/35481781/
Samia Mohammed
Sublethal doxorubicin promotes migration and invasion of breast cancer cells: role of Src Family non-receptor tyrosine kinases https://pubmed.ncbi.nlm.nih.gov/34315513/
Robert Morabito
Cyclin-Dependent Kinase Sensor Transgenic Zebrafish Lines for Improved Cell Cycle State Visualization in Live Animals https://pubmed.ncbi.nlm.nih.gov/34669514/
Aziz Rangwala
Mutation in Abl kinase with altered drug-binding kinetics indicates a novel mechanism of imatinib resistance https://pubmed.ncbi.nlm.nih.gov/34750265/
2020
Seamus Balinth
p63-related signaling at a glance https://pubmed.ncbi.nlm.nih.gov/32917730/
Jessica Imperato
Mucosal CD8 T Cell Responses Are Shaped by Batf3-DC After Foodborne Listeria monocytogenes Infection https://pubmed.ncbi.nlm.nih.gov/33042159/
Megan Mladinich
NS5 Sumoylation Directs Nuclear Responses That Permit Zika Virus To Persistently Infect Human Brain Microvascular Endothelial Cells https://pubmed.ncbi.nlm.nih.gov/32699085/
Robert Morabito
Visualizing the metazoan proliferation-quiescence decision in vivo https://pubmed.ncbi.nlm.nih.gov/33350383/
Jinelle Wint
Lrrk2 modulation of Wnt signaling during zebrafish development https://pubmed.ncbi.nlm.nih.gov/32623786/
2018
Deborah Kim
Viral FGARAT ORF75A promotes early events in lytic infection and gammaherpesvirus pathogenesis in mice https://pubmed.ncbi.nlm.nih.gov/29390024/
Chitra Mohan
VivosX, a disulfide crosslinking method to capture site-specific, protein-protein interactions in yeast and human cells. eLife 2018;7:e36654
Eric Paulissen
VivosX, a disulfide crosslinking method to capture site-specific, protein-protein interactions in yeast and human cells https://pubmed.ncbi.nlm.nih.gov/30091702/
Padmina Shrestha
Chromatin-mediated translational control is essential for neural cell fate specification https://pubmed.ncbi.nlm.nih.gov/30456361/
Jialin Sun
Activity-dependent aberrations in gene expression and alternative splicing in a mouse model of Rett syndrome https://pubmed.ncbi.nlm.nih.gov/29769330/
2017
Azeez Aranmolate
https://www.ncbi.nlm.nih.gov/pubmed/28806929
Gregory Carbonetti
https://www.ncbi.nlm.nih.gov/pubmed/28326944
Sajjad Hossain
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5654536/
https://www.ncbi.nlm.nih.gov/pubmed/28238256
Zhimin liu
https://academic.oup.com/bioinformatics/article/34/5/739/4562326
https://www.nature.com/articles/ncomms15586
Debjani Pal
https://www.ncbi.nlm.nih.gov/pubmed/28224990
https://www.ncbi.nlm.nih.gov/pubmed/28092266
Eric Paulissen
https://www.molbiolcell.org/doi/10.1091/mbc.e16-05-0324
Anthony Rampello
https://www.ncbi.nlm.nih.gov/pubmed/29097521
https://www.ncbi.nlm.nih.gov/pubmed/28214511
Danilo Segovia
https://www.sciencedirect.com/science/article/pii/S0022283617303674?via%3Dihub
Megan Mladinich
Zika Virus Persistently Infects and Is Basolaterally Released from Primary Human Brain Microvascular Endothelial Cells https://pubmed.ncbi.nlm.nih.gov/28698279/
Neha Puri
https://www.ncbi.nlm.nih.gov/pubmed/28575662
Lu Sun
https://www.ncbi.nlm.nih.gov/pubmed/28973436
Upasna Thapar
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5357041/pdf/f1000research-6-11356.pdf
Xiaoyu Zhao
https://doi.org/10.1186/s12859-017-1697-6
https://doi.org/10.1016/j.ccell.2017.07.011
2016
Beth M. Harvey
http://www.jbc.org/content/291/31/16348.long
Nadia Jaber & Jennifer L. DeLeon
https://journals.biologists.com/jcs/article/129/23/4424/55594/Vps34-regulates-Rab7-and-late-endocytic
Megan Mladinich
Tackling Cancer Stem Cells via Inhibition of EMT Transcription Factors https://pubmed.ncbi.nlm.nih.gov/27840647/
Evelyn Prugar
http://journals.plos.org/plosgenetics/article?id=10.1371%2Fjournal.pgen.1006226
Michael Tramantano
https://elifesciences.org/content/5/e14243
Jae Kyo Yi
http://jmg.bmj.com/content/53/6/389.full
2015
Saadat U. Aleem
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0131062
http://www.jbc.org/content/290/26/15934.full
Azeez Aranmolate
http://onlinelibrary.wiley.com/doi/10.1111/jnc.13241/abstract
Anna Banach
http://cancerres.aacrjournals.org/content/75/13/2674
http://www.impactjournals.com/oncotarget/index.php?journal=oncotarget&page=article&op=view&path%5B%5D=3978&path%5B%5D=9674
http://dev.biologists.org/content/143/2/244
http://cancerres.aacrjournals.org/content/75/17/3650
Brandon Cienewicz & Qiwen Dong
http://jvi.asm.org/content/89/13/6562.full
Gregory Carbonetti
http://ojrd.biomedcentral.com/articles/10.1186/s13023-015-0248-3
http://www.newsday.com/opinion/letters/letter-liquid-pot-still-requires-testing-1.10364713
http://www.bloodjournal.org/content/125/9/1444?sso-checked=true
Matthew W. Elmes
http://www.jbc.org/content/290/14/8711.full
Andrew Fesler
http://www.impactjournals.com/oncotarget/index.php?journal=oncotarget&page=article&op=view&path%5B%5D=4425&path%5B%5D=10086
http://www.impactjournals.com/oncotarget/index.php?journal=oncotarget&page=article&op=view&path%5B%5D=3771&path%5B%5D=9553
Hana Goto
http://dev.biologists.org/content/143/2/244
William M. Hanes
http://static.smallworldlabs.com/molmedcommunity/content/pdfstore/15_142_Hanes.pdf
Beth M. Harvey
http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005551
http://ps.oxfordjournals.org/content/94/2/296.full
Nadia Jaber
http://www.cell.com/molecular-cell/fulltext/S1097-2765(15)00176-8
http://www.sciencedirect.com/science/article/pii/S1550413115004829
Liang Jin
http://link.springer.com/article/10.1007/s00294-015-0546-2#enumeration
http://mcb.asm.org/content/35/20/3448.full
JiHyun Kim
http://link.springer.com/article/10.1007%2Fs11745-015-4007-y#enumeration
Samia Mohammed
http://www.nature.com/cddis/journal/v6/n10/full/cddis2015268a.html
Benjamin Newcomb
http://embomolmed.embopress.org/content/7/6/692
Neha Puri
http://jwh.iwaponline.com/content/13/1/42
Upasna Thapar
http://www.pnas.org/content/112/28/8602
http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0133016
Jae Kyo Yi
http://www.jbc.org/content/290/42/25356.full
Jae Kyo Yi
http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1005591
Xiaoyu Zhao
An extensive allelic series of Drosophila kae1 mutants reveals diverse and tissue-specific requirements for t6A biogenesis https://pubmed.ncbi.nlm.nih.gov/26516084/
2014
Ying Cai
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0084630
Devin Camenares
http://www.jbc.org/content/288/42/30527.long or http://www.ncbi.nlm.nih.gov/pubmed/23986442
Nikki Evensen
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0082811
http://jnci.oxfordjournals.org/content/105/18/1402.long
Wangzhi Li
http://www.nature.com/ncomms/2014/140513/ncomms4812/full/ncomms4812.html?message-global=remove
http://www.futuremedicine.com/doi/abs/10.2217/epi.14.31
https://www.landesbioscience.com/article/29378/full_text/#load/info/all
http://link.springer.com/article/10.1186/1756-8935-6-S1-O25
Mahalakshmi Ramadass
http://www.ncbi.nlm.nih.gov/pubmed/24367026
http://www.ncbi.nlm.nih.gov/pubmed/25466612
All publications - http://www.ncbi.nlm.nih.gov/pubmed/?term=Ramadass+M
Krithika Venkataraman
http://m.nar.oxfordjournals.org/content/early/2014/09/08/nar.gku802.full